Package index
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assess_recov_traj() - Assess trajectory recovery performance for a single cell.
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auto_select_kernel_params() - Automatically Select Kernel Parameters
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cell_lineage_data - Cell Lineage Time Series Dataset
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compute_bw_gaussian() - Data-driven Bandwidth Selection for Gaussian Kernel
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evaluate_Fj() - Evaluate \(F_j\) and Recovery the Trajectory for a Single Variable
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kernelODE_step1() - Smoothing Spline Estimates (Step 1 of Kernel ODE)
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kernelODE_step2() - Derivative Function Estimation (Step 2 of Kernel ODE)
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linear_kernel()polynomial_kernel()gaussian_kernel()matern_kernel() - Kernel Functions
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prune_network() - Prune a Network Estimated by Kernel ODE
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refit_kernel_ODE() - Refit Kernel ODE with a Given Regulatory Network
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theta_to_adj_matrix() - Convert theta Coefficients to Regulatory Network